Function reference • SPOTlight

All functions

SPOTlight(<SingleCellExperiment>,<ANY>) SPOTlight(<ANY>,<SingleCellExperiment>) SPOTlight(<Seurat>,<ANY>) SPOTlight(<ANY>,<Seurat>) SPOTlight(<ANY>,<dgCMatrix>) SPOTlight(<dgCMatrix>,<ANY>) SPOTlight(<ANY>,<DelayedMatrix>) SPOTlight(<DelayedMatrix>,<ANY>) SPOTlight(<ANY>,<ANY>) SPOTlight(<matrix>,<matrix>): Deconvolution of mixture using single-cell data

.mock_sc() .mock_sp() .get_mgs(): Synthetic single-cell, mixture and marker data

plotCorrelationMatrix(<matrix>): Plot Correlation Matrix

plotImage(<character>) plotImage(<Seurat>) plotImage(<SpatialExperiment>) plotImage(<array>) plotImage(<ANY>): Plot JP(E)G/PNG/Raster/RGB images

plotInteractions(): Plot group interactions

plotSpatialScatterpie(<matrix>,<matrix>) plotSpatialScatterpie(<Seurat>,<ANY>) plotSpatialScatterpie(<SpatialExperiment>,<ANY>) plotSpatialScatterpie(<data.frame>,<ANY>) plotSpatialScatterpie(<ANY>,<data.frame>) plotSpatialScatterpie(<ANY>,<ANY>): Spatial scatterpie

plotTopicProfiles(<NMF>,<ANY>) plotTopicProfiles(<NMF>,<character>): Plot NMF topic profiles